# Clearing up the confusion around Jacobi functions

The Jacobi elliptic functions sn and cn are analogous to the trigonometric functions sine and cosine. The come up in applications such as nonlinear oscillations and conformal mapping. Unfortunately there are multiple conventions for defining these functions. The purpose of this post is to clear up the confusion around these different conventions.

The image above is a plot of the function sn [1].

## Modulus, parameter, and modular angle

Jacobi functions take two inputs. We typically think of a Jacobi function as being a function of its first input, the second input being fixed. This second input is a “dial” you can turn that changes their behavior.

There are several ways to specify this dial. I started with the word “dial” rather than “parameter” because in this context parameter takes on a technical meaning, one way of describing the dial. In addition to the “parameter,” you could describe a Jacobi function in terms of its modulus or modular angle. This post will be a Rosetta stone of sorts, showing how each of these ways of describing a Jacobi elliptic function are related.

The parameter m is a real number in [0, 1]. The complementary parameter is m‘ = 1 – m. Abramowitz and Stegun, for example, write the Jacobi functions sn and cn as sn(um) and cn(um). They also use m1 = rather than m‘ to denote the complementary parameter.

The modulus k is the square root of m. It would be easier to remember if m stood for modulus, but that’s not conventional. Instead, m is for parameter and k is for modulus. The complementary modulus k‘ is the square root of the complementary parameter.

The modular angle α is defined by m = sin² α.

Note that as the parameter m goes to zero, so does the modulus k and the modular angle α. As any one of these three goes to zero, the Jacobi functions sn and cn converge to their counterparts sine and cosine. So whether your dial is the parameter, modulus, or modular angle, sn converges to sine and cn converges to cosine as you turn the dial toward zero.

As the parameter m goes to 1, so does the modulus k, but the modular angle α goes to π/2. So if your dial is the parameter or the modulus, it goes to 1. But if you think of your dial as modular angle, it goes to π/2. In either case, as you turn the dial to the right as far as it will go, sn converges to hyperbolic secant, and cn converges to the constant function 1.

## Quarter periods

In addition to parameter, modulus, and modular angle, you’ll also see Jacobi function described in terms of K and K‘. These are called the quarter periods for good reason. The functions sn and cn have period 4K as you move along the real axis, or move horizontally anywhere in the complex plane. They also have period 4iK‘. That is, the functions repeat when you move a distance 4K‘ vertically [2].

The quarter periods are a function of the modulus. The quarter period K along the real axis is

and the quarter period K‘ along the imaginary axis is given by K‘(m) = K(m‘) = K(1 – m).

The function K(m) is known as “the complete elliptic integral of the first kind.”

## Amplitude

So far we’ve focused on the second input to the Jacobi functions, and three conventions for specifying it.

There are two conventions for specifying the first argument, written either as φ or as u. These are related by

The angle φ is called the amplitude. (Yes, it’s an angle, but it’s called an amplitude.)

When we said above that the Jacobi functions had period 4K, this was in terms of the variable u. Note that when φ = π/2, uK.

## Jacobi elliptic functions in Mathematica

Mathematica uses the u convention for the first argument and the parameter convention for the second argument.

The Mathematica function JacobiSN[u, m] computes the function sn with argument u and parameter m. In the notation of A&S, sn(um).

Similarly, JacobiCN[u, m] computes the function cn with argument u and parameter m. In the notation of A&S, cn(um).

We haven’t talked about the Jacobi function dn up to this point, but it is implemented in Mathematica as JacobiDN[u, m].

The function that solves for the amplitude φ as a function of u is JacobiAmplitude[um m].

The function that computes the quarter period K from the parameter m is EllipticK[m].

## Jacobi elliptic functions in Python

The SciPy library has one Python function that computes four mathematical functions at once. The function scipy.special.ellipj takes two arguments, u and m, just like Mathematica, and returns sn(um), cn(um), dn(um), and the amplitude φ(um).

The function K(m) is implemented in Python as scipy.special.ellipk.

## Related posts

[1] The plot was made using JacobiSN[0.5, z] and the function ComplexPlot described here.

[2] Strictly speaking, 4iK‘ is a period. It’s the smallest vertical period for cn, but 2iK‘ is the smallest vertical period for sn.

# Koide’s coincidence

The p-norm of a vector is defined to be the pth root of the sum of its pth powers.

Such norms occur frequently in application [1]. Yoshio Koide discovered in 1981 that if you take the masses of the electron, muon, and tau particles, the ratio of the 1 norm to the 1/2 norm is very nearly 2/3. Explicitly,

to at least four decimal places. Since the ratio is tantalizingly close to 2/3, some believe there’s something profound going on here and the value is exactly 2/3, but others believe it’s just a coincidence.

The value of 2/3 is interesting for two reasons. Obviously it’s a small integer ratio. But it’s also exactly the midpoint between the smallest and largest possible value. More on that below.

Is the value 2/3 within the measure error of the constants? We’ll investigate that with a little Python code.

## Python code

The masses of particles are available in the physical_constants dictionary in scipy.constants. For each constant, the dictionary contains the best estimate of the value, the units, and the uncertainty (standard deviation) in the measurement [2].

    from scipy.constants import physical_constants as pc
from scipy.stats import norm

def pnorm(v, p):
return sum([x**p for x in v])**(1/p)

def f(v):
return pnorm(v, 1) / pnorm(v, 0.5)

m_e = pc["electron mass"]
m_m = pc["muon mass"]
m_t = pc["tau mass"]

v0 = [m_e[0], m_m[0], m_t[0]]

print(f(v0))


This says that the ratio of the 1 norm and 1/2 norm is 0.666658, slightly less than 2/3. Could the value be exactly 2/3 within the resolution of the measurements? How could we find out?

## Measurement uncertainty

The function f above is minimized when its arguments are all equal, and maximized when its arguments are maximally unequal. To see this, note that f(1, 1, 1) = 1/3 and f(1, 0, 0) = 1. You can prove that those are indeed the minimum and maximum values. To see if we can make f larger, we want to increase the largest value, the mass of tau, and decrease the others. If we move each value one standard deviation in the desired direction, we get

    v1 = [m_e[0] - m_e[2],
m_m[0] - m_m[2],
m_t[0] + m_t[2]]
print(f(v1))


which returns 0.6666674, just slightly bigger than 2/3. Since the value can be bigger than 2/3, and less than 2/3, the intermediate value theorem says there are values of the constants within one standard deviation of their mean for which we get exactly 2/3.

Now that we’ve shown that it’s possible to get a value above 2/3, how likely is it? We can do a simulation, assuming each measurement is normally distributed.

    N = 1000
above = 0
for _ in range(N):
r_e = norm(m_e[0], m_e[2]).rvs()
r_m = norm(m_m[0], m_m[2]).rvs()
r_t = norm(m_t[0], m_t[2]).rvs()
t = f([r_e, r_m, r_t])
if t > 2/3:
above += 1
print(above)


When we I ran this, I got 168 values above 2/3 and the rest below. So based solely on our calculations here, not taking into account any other information that may be important, it’s plausible that Koide’s ratio is exactly 2/3.

***

[1] Strictly speaking, we should take the absolute values of the vector components. Since we’re talking about masses here, I simplified slightly by assuming the components are non-negative.

Also, what I’m calling the p “norm” is only a norm if p is at least 1. Values of p less than 1 do occur in application, even though the functions they define are not norms. I’m pretty sure I’ve blogged about such an application, but I haven’t found the post.

[2] The SciPy library obtained its values for the constants and their uncertainties from the CODATA recommended values, published in 2014.

# Distribution of carries

Suppose you add two long numbers together. As you work your way toward the result, adding digits from right to left, sometimes you carry a 1 and sometimes you don’t. How often do you carry 1?

Now suppose you add three numbers at a time. Now your carry might be 0, 1, or 2. How often does each appear? How do things change if you’re not working in base 10?

John Holte goes into this problem in detail in [1]. We’ll only look at his first result here.

Suppose we’re adding m numbers together in base b, with each digit being uniformly distributed. Then at each step of the addition process, the probability distribution of the amount we carry out only depends on the amount we carried in from the previous step. In other words, the carries form a Markov chain!

This means that we can do more than describe the distribution of the amounts carried. We can specify the transition probabilities for carries, i.e. the distribution on the amount carried out, conditional on the the amount carried in.

## Examples

When we add two base ten numbers, m = 2 and b = 10, we have the transition matrix

This means that on average, we’re as likely to carry 0 as to carry 1. But more specifically, there’s a 55% chance that we’ll carry a 1 if we carried a 1 on the previous step, and also a 55% chance that we won’t have a carry this time if we didn’t have one last time.

If we add three numbers, things get a little more interesting. Now the transition matrix is

This gives the probabilities of each out carry for each in carry. We can compute the long run distribution from the matrix above to find that when adding three long numbers, we’ll carry 0 or 1 with probability 1/6 each, and carry 1 with probability 2/3.

When adding three binary numbers, the transition matrix is fairly different than for base 10

but the long run distributions are the same: carry a 1 two thirds of the time, and split the remaining probability equally between carrying 0 and 2.

The transition matrices don’t change much for larger bases; base 100 doesn’t look much different than base 100, for example.

Finally, let’s do an example adding five numbers in base 10. The transition matrix is

and the long run distribution is 1/60, 13/60, 33/60, 13/60, and 1/60 for carries of 0 through 4.

## General case

In general, when adding m numbers in base b, Holte gives the transition probabilities as

Here is some Python code to compute the transition matrices.

from scipy import floor, zeros, array
from scipy.special import comb
from numpy.linalg import matrix_power

# transition probability
def pi(i, j, b, m):
s = 0
for r in range(0, j - int(floor(i/b)) + 1):
s += (-1)**r * comb(m+1, r) * comb(m-i-1 +b*(j-r+1), m)
return s/b**m

def transition_matrix(b, m):
P =  [ [pi(i, j, b, m) for j in range(m)]
for i in range(m) ]
return array(P)


You can find the long run probabilities by raising the transition matrix to a large power.

## Related posts

[1] John M. Holte. The American Mathematical Monthly, Vol. 104, No. 2 (Feb., 1997), pp. 138-149

# John Conway’s subprime fib sequence

Here’s how to construct what John Horton Conway calls his “subprime fib” sequence. Seed the sequence with any two positive integers. Then at each step, sum the last two elements of the sequence. If the result is prime, append it to the sequence. Otherwise divide it by its smallest prime factor and append that.

If we start the sequence with (1, 1) we get the sequence

1, 1, 2, 3, 5, 4, 3, 7, 5, 6, 11, 17, 14, 31, 15, 23, 19, 21, 20, 41, 61, 51, 56, 107, 163, 135, 149, 142, 97, 239, 168, 37, 41, 39, 40, 79, 17, 48, 13, 61, 37, 49, 43, 46, 89, 45, 67, 56, 41, 97, 69, 83, 76, 53, 43, 48, 13,

We know it will keep repeating because 48 followed by 13 has occurred before, and the “memory” of the sequence only stretches back two steps.

6, 3, 3, 3, …

It’s easy to see that if the sequence ever repeats a value n then it will produce only that value from then on, because n + n = 2n is obviously not prime, and its smallest prime factor is 2.

Conway believes that this sequence will always get stuck in a cycle but this has not been proven.

Here’s Python code to try out Conway’s conjecture:

from sympy import isprime, primefactors

def subprime(a, b):

seq = [a, b]
repeated = False
while not repeated:
s = seq[-1] + seq[-2]
if not isprime(s):
s //= primefactors(s)[0]
repeated = check_repeat(seq, s)
seq.append(s)
return seq

def check_repeat(seq, s):

if not s in seq:
return False

if seq[-1] == s:
return True

# all previous occurances of the last element in seq
indices = [i for i, x in enumerate(seq) if x == seq[-1]]

for i in indices[:-1]:
if seq[i+1] == s:
return True

return False


I’ve verified by brute force that the sequence repeats for all starting values less than 1000.

Related posts:

# Circular law for random matrices

Suppose you create a large matrix M by filling its components with random values. If has size n by n, then we require the probability distribution for each entry to have mean 0 and variance 1/n. Then the Girko-Ginibri circular law says that the eigenvalues of M are approximately uniformly distributed in the unit disk in the complex plane. As the size n increases, the distribution converges to a uniform distribution on the unit disk.

The probability distribution need not be normal. It can be any distribution, shifted to have mean 0 and scaled to have variance 1/n, provided the tail of the distribution isn’t so thick that the variance doesn’t exist. If you don’t scale the variance to 1/n you still get a circle, just not a unit circle.

We’ll illustrate the circular law with a uniform distribution. The uniform distribution has mean 1/2 and variance 1/12, so we will subtract 1/2 and multiply each entry by √(12/n).

Here’s our Python code:

    import matplotlib.pyplot as plt
import numpy as np

n = 100
M = np.random.random((n,n)) - 0.5
M *= (12/n)**0.5
w = np.linalg.eigvals(M)
plt.scatter(np.real(w), np.imag(w))
plt.axes().set_aspect(1)
plt.show()


When n=100 we get the following plot.

When n=1000 we can see the disk filling in more.

Note that the points are symmetric about the real axis. All the entries of M are real, so its characteristic polynomial has all real coefficients, and so its roots come in conjugate pairs. If we randomly generated complex entries for M we would not have such symmetry.

Related post: Fat-tailed random matrices

# 3D chess knight moves

I’ve written before about a knight’s random walk on an ordinary chess board. In this post I’d like to look at the generalization to three dimensions (or more).

So what do we mean by 3D chess? For this post, we’ll have a three dimensional lattice of possible positions, of size 8 by 8 by 8. You could think of this as a set of 8 ordinary chess boards stacked vertically. To generalize a knight’s move to this new situation, we’ll say that a knight move consists of moving 2 steps in one direction and 1 step in an orthogonal direction. For example, he might move up two levels and over one position horizontally.

Suppose our knight walks randomly through the chess lattice. At each point, he evaluates all possible moves and chooses one randomly with all possible moves having equal probability. How long on average will it take our knight to return to where he started?

As described in the post about the two dimensional problem, we can find the average return time using a theorem about Markov chains.

The solution is to view the problem as a random walk on a graph. The vertices of the graph are the squares of a chess board and the edges connect legal knight moves. The general solution for the time to first return is simply 2N/k where N is the number of edges in the graph, and k is the number of edges meeting at the starting point.

The problem reduces to counting N and k. This is tedious in two dimensions, and gets harder in higher dimensions. Rather than go through a combinatorial argument, I’ll show how to compute the result with a little Python code.

To count the number of edges N, we’ll add up the number of edges at each node in our graph, and then divide by 2 since this process will count each edge twice. We will iterate over our lattice, generate all potential moves, and discard those that would move outside the lattice.

from numpy import all
from itertools import product, combinations

def legal(v):
return all([ 0 <= t < 8 for t in v])

count = 0
for position in product(range(8), range(8), range(8)):
# Choose two directions
for d in combinations(range(3), 2):
# Move 1 step in one direction
# and 2 steps in the other.
for step in [1, 2]:
for sign0 in [-1, 1]:
for sign1 in [-1, 1]:
move = list(position)
move[d[0]] += sign0*step
move[d[1]] += sign1*(3-step)
if legal(move):
count += 1
print(count // 2)


This tells us that there are N = 4,032 nodes in our graph of possible moves. The number of starting moves k depends on our starting point. For example, if we start at a corner, then we have 6 possibilities. In this case we should expect our knight to return to his starting point in an average of 2*4032/6 = 1,344 moves.

We can easily modify the code above. To look at different size lattices, we could change all the 8’s above. The function legal would need more work if the lattice was not the same size in each dimensions.

We could also look at four dimensional chess by adding one more range to the position loop and changing the combinations to come from range(4) rather than range(3). In case you’re curious, in four dimensions, the graph capturing legal knight moves in an 8 by 8 by 8 by 8 lattice would have 64,512 edges. If our knight started in a corner, he’d have 12 possible starting moves, so we’d expect him to return to his starting position on average after 5,275 moves.

# Probability of coprime sets

The latest blog post from Gödel’s Lost Letter and P=NP looks at the problem of finding relatively prime pairs of large numbers. In particular, they want a deterministic algorithm. They mention in passing that the probability of a set of k large integers being relatively prime (coprime) is 1/ζ(k) where ζ is the Riemann zeta function. This blog post will look closer at that statement.

## How large is large?

What does it mean that the numbers are large? That they are large enough that the asymptotic result given by the zeta function is accurate enough. We’ll explore this with simulation code shortly.

The exact statement is that in the limit as N goes to infinity, the probability of k integers chosen uniformly from 1 to N being coprime converges to 1/ζ(k). I won’t go into the proof here, but in a nutshell, it falls out of Euler’s product formula for the zeta function.

## What does it mean for a set of numbers to be coprime?

The probability above seemed wrong to me at first. The function ζ(k) decreases as k increases, and so its reciprocal increases. That means it’s more likely that a set of numbers is coprime as the size of the set increases. But the larger the set of numbers, the more likely it is that two will have a common factor, so shouldn’t the probability that they’re coprime go down with k, not up?

The resolution to the apparent contradiction is that I had the wrong idea of coprime in mind. Two integers are coprime if they have no prime factors in common. How do you generalize that to more than two integers? You could define a set of numbers to be coprime if every pair of numbers in the set is coprime. That’s the definition I had in mind. But that’s not the standard definition. The right definition here is that the greatest common divisor of the set is 1. For example, (6, 14, 21) would be coprime because no single prime divides all three numbers, even though no pair of numbers from the set is coprime.

## Python simulation

Let’s write some Python code to try this out. We’ll randomly generate some sets of large numbers and see how often they’re coprime.

How do you generate large random integers in Python? You can use the function getrandbits to generate numbers as large as you like. In the code below we’ll generate 128-bit integers.

How do you compute the greatest common divisor in Python? There’s a library function gcd, but it only takes two integers. We’ll use the reduce function to fold gcd over a list of integers.

How do you compute the zeta function in Python? SciPy doesn’t have an implementation of ζ(x) per se, but it does have an implementation of ζ(x)-1. Why not just implement ζ itself? Because for large x, ζ(x) is close to 1, so more precision can be saved by computing ζ – 1.

Putting these pieces together, here’s code to randomly generate triples of 128-bit integers, see how often they’re coprime, and compare the result to 1/ζ(3).

    from random import getrandbits
from fractions import gcd
from functools import reduce
from scipy.special import zetac

def riemann_zeta(x):
return zetac(x) + 1

k = 3
size = 128
N = 10000

coprime_count = 0
for _ in range(N):
x = [getrandbits(size) for _ in range(k)]
if reduce(gcd, x) == 1:
coprime_count += 1
print(coprime_count/N)
print(1/riemann_zeta(k))


When I ran this I got

    0.8363
0.831907372581


Simulation agrees with theory to two decimal places, which is just what we should expect from 10,000 repetitions. (We’d expect error on the order of 1/√N.)

Here’s what I got when I changed k to 4:

    0.9234
0.923938402922


And here’s what I got for k set to 5:

    0.9632
0.964387340429


# Curvature and automatic differentiation

Curvature is tedious to calculate by hand because it involves calculating first and second order derivatives. Of course other applications require derivatives too, but curvature is the example we’ll look at in this post.

## Computing derivatives

It would be nice to write programs that only explicitly implement the original function and let software take care of finding the derivatives.

### Numerical differentiation

Finite difference approximations for derivatives are nothing new. For example, Euler (1707–1783) used finite differences to numerically solve differential equations. But numerical differentiation can be inaccurate or unstable, especially for higher order derivatives.

### Symbolic differentiation

Symbolic differentiation is another approach, having the computer manipulate expressions much as a person would do by hand. It works well for many problems, though it scales poorly for large problems. It also requires functions to be presented in traditional mathematical form, not in the form of source code.

### Automatic differentiation

Automatic differentiation is a third way. Like numerical differentiation, it works with floating point numbers, not symbolic expressions. But unlike numerical differentiation, the result does not have approximation error.

As someone put it, automatic differentiation applies the chain rule to floating point numbers rather than to symbolic expressions.

## Python implementation

I’ll use the Python library autograd to compute curvature and illustrate automatic differentiation. autograd is not the most powerful automatic differentiation library for Python, but it is the simplest I’ve seen.

We will compute the curvature of a logistic curve.

The curvature of the graph of a function is given by

Here’s Python code using autograd to compute the curvature.

    import autograd.numpy as np

def f(x):
return 1/(1 + np.exp(-x))

f1 = grad(f)  # 1st derivative of f
f2 = grad(f1) # 2nd derivative of f

def curvature(x):
return abs(f2(x))*(1 + f1(x)**2)**-1.5


## Curvature plots

The graph is relatively flat in the middle and at the far ends. In between, the graph bends creating two regions of higher curvature.

    import matplotlib.pyplot as plt

x = np.linspace(-5, 5, 300)
plt.plot(x, f(x))
plt.xlabel("$x$")
plt.ylabel("$y$")
plt.title("Logisitic curve")
plt.savefig("logistic_curve.svg")


Now let’s look at the curvature.

    y = [curvature(t) for t in x]
plt.plot(x, y)
plt.xlabel("$x$")
plt.ylabel(r"$\kappa(x)$")
plt.title("Curvature")
plt.savefig("plot_logistic_curvature.svg")


As we should expect, the curvature is small at the ends and in the middle, with local maxima in between.

We can also look at the signed curvature, the same expression as curvature but without the absolute value.

We plot this with the following code.

    def signed_curvature(x):
return f2(x)*(1 + f1(x)**2)**-1.5

y = [signed_curvature(t) for t in x]
plt.plot(x, y)
plt.xlabel("$x$")
plt.ylabel(r"$k(x)$")
plt.title("Signed curvature")
plt.savefig("graph_signed_curvature.svg")


The result looks more like a sine wave.

The positive values mean the curve is bending counterclockwise, and the negative values mean the curve is bending clockwise.

Related post: Squircles and curvature

# Summing random powers up to a threshold

Pick random numbers uniformly between 0 and 1, adding them as you go, and stop when you get a result bigger than 1. How many numbers would you expect to add together on average?

You need at least two samples, and often two are enough, but you might get any number, and those larger numbers will pull the expected value up.

Here’s a simulation program in Python.

    from random import random
from collections import Counter

N = 1000000
c = Counter()
for _ in range(N):
x = 0
steps = 0
while x < 1:
x += random()
steps += 1
c[steps] += 1

print( sum([ k*c[k] for k in c.keys() ])/N )


When I ran it I got 2.718921. There’s a theoretical result first proved by W. Weissblum that the expected value is e = 2.71828… Our error was on the order of 1/√N, which is what we’d expect from the central limit theorem.

Now we can explore further in a couple directions. We could take a look at a the distribution of the number steps, not just its expected value. Printing c shows us the raw data.

    Counter({
2: 499786,
3: 333175,
4: 125300,
5:  33466,
6:   6856,
7:   1213,
8:    172,
9:     29,
10:     3
})


And here’s a plot.

We could also generalize the problem by taking powers of the random numbers. Here’s what we get when we use exponents 1 through 20.

There’s a theoretical result that the expected number of steps is asymptotically equal to cn where

I computed c = 1.2494. The plot above shows that the dependence on the exponent n does look linear. The simulation results appear to be higher than the asymptotic prediction by a constant, but that’s consistent with the asymptotic prediction since relative to n, a constant goes away as n increases.

Reference for theoretical results: D. J. Newman and M. S. Klamkin. Expectations for Sums of Powers. The American Mathematical Monthly, Vol. 66, No. 1 (Jan., 1959), pp. 50-51

# Average fraction round up

Pick a large number n. Divide n by each of the positive integers up to n and round the results up to the nearest integer. On average, how far do you round up?

Or in terms of probability, what is the expected distance between a fraction n/r, where n is large and fixed and r is chosen randomly between 1 and n, and the nearest larger integer?

In symbols, the question above is asking for the approximate value of

for large n, i.e. in the limit as n goes to ∞. Here ⌈x⌉ denotes the ceiling of x, the smallest integer greater than or equal to x.

Let’s plot this as a function of n and see what it looks like. Here’s the Python code.

    import matplotlib.pyplot as plt
from numpy import ceil, arange

def f(n):
return sum( [ceil(n/r) - n/r for r in range(1, n)] )/n

x = arange(1, 100)
y = [f(n) for n in x]
plt.plot(x, y)
plt.show()


And here’s the result.

It appears the graph may be converging to some value, and in fact it is. Charles de la Vallée Poussin proved in 1898 that the limiting value is the Euler–Mascheroni constant γ = 0.5772…. This constant is the limiting difference between the nth harmonic number and log n, i.e.

We can add a horizontal line to our plot to see how well the graph seems to match γ. To do this we need to import the constant euler_gamma from numpy and add the

    plt.axhline(y=euler_gamma, linestyle=":")

after the plot command. When we do, this is what we see.

It looks like the plot is converging to a value slightly less than γ. Apparently the convergence is very slow. When we go out to 10,000 the plot is closer to being centered around γ but still maybe below γ more than above.

If we evaluate our function at n = 1,000,000, we get 0.577258… while γ = 0.577215….

At n = 10,000,000 we get 0.577218…. So taking 100 times as many terms in our sum gives us one extra correct decimal place, as we’d expect of a random processes since convergence usually goes like 1/√n.

# Equation for the Eiffel Tower

Robert Banks’s book Towing Icebergs, Falling Dominoes, and Other Adventures in Applied Mathematics describes the Eiffel Tower’s shape as approximately the logarithmic curve

where y* and x0 are chosen to match the tower’s dimensions.

Here’s a plot of the curve:

And here’s the code that produced the plot:

from numpy import log, exp, linspace, vectorize
import matplotlib.pyplot as plt

# Taken from "Towing Icebergs, Falling Dominoes,
# and Other Adventures in Applied Mathematics"
# by Robert B. Banks

# Constants given in Banks in feet. Convert to meters.
feet_to_meter = 0.0254*12
ystar  = 201*feet_to_meter
x0     = 207*feet_to_meter
height = 984*feet_to_meter

# Solve for where to cut off curve to match height of the tower.
# - ystar log xmin/x0 = height
xmin = x0 * exp(-height/ystar)

def f(x):
if -xmin < x < xmin:
return height
else:
return -ystar*log(abs(x/x0))
curve = vectorize(f)

x = linspace(-x0, x0, 400)

plt.plot(x, curve(x))
plt.xlim(-2*x0, 2*x0)
plt.xlabel("Meters")
plt.ylabel("Meters")
plt.title("Eiffel Tower")

plt.axes().set_aspect(1)
plt.savefig("eiffel_tower.svg")


Related post: When length equals area
The St. Louis arch is approximately a catenary, i.e. a hyperbolic cosine.

# Why is Kullback-Leibler divergence not a distance?

The Kullback-Leibler divergence between two probability distributions is a measure of how different the two distributions are. It is sometimes called a distance, but it’s not a distance in the usual sense because it’s not symmetric. At first this asymmetry may seem like a bug, but it’s a feature. We’ll explain why it’s useful to measure the difference between two probability distributions in an asymmetric way.

The Kullback-Leibler divergence between two random variables X and Y is defined as

This is pronounced/interpreted several ways:

• The divergence from Y to X
• The relative entropy of X with respect to Y
• How well Y approximates X
• The information gain going from the prior Y to the posterior X
• The average surprise in seeing Y when you expected X

A theorem of Gibbs proves that K-L divergence is non-negative. It’s clearly zero if X and Y have the same distribution.

The K-L divergence of two random variables is an expected value, and so it matters which distribution you’re taking the expectation with respect to. That’s why it’s asymmetric.

As an example, consider the probability densities below, one exponential and one gamma with a shape parameter of 2.

The two densities differ mostly on the left end. The exponential distribution believes this region is likely while the gamma does not. This means that an expectation with respect to the exponential distribution will weigh things in this region more heavily. In an information-theoretic sense, an exponential is a better approximation to a gamma than the other way around.

Here’s some Python code to compute the divergences.

    from scipy.integrate import quad
from scipy.stats import expon, gamma
from scipy import inf

def KL(X, Y):
f = lambda x: -X.pdf(x)*(Y.logpdf(x) - X.logpdf(x))

e = expon
g = gamma(a = 2)

print( KL(e, g) )
print( KL(g, e) )


This returns

    (0.5772156649008394, 1.3799968612282498e-08)
(0.4227843350984687, 2.7366807708872898e-09)


The first element of each pair is the integral and the second is the error estimate. So apparently both integrals have been computed accurately, and the first is clearly larger. This backs up our expectation that it’s more surprising to see a gamma when expecting an exponential than vice versa.

Although K-L divergence is asymmetric in general, it can be symmetric. For example, suppose X and Y are normal random variables with the same variance but different means. Then it would be equally surprising to see either one when expecting the other. You can verify this in the code above by changing the KL function to integrate over the whole real line

    def KL(X, Y):
f = lambda x: -X.pdf(x)*(Y.logpdf(x) - X.logpdf(x))


and trying an example.

n1 = norm(1, 1)
n2 = norm(2, 1)

print( KL(n1, n2) )
print( KL(n2, n1) )


This returns

(0.4999999999999981, 1.2012834963423225e-08)
(0.5000000000000001, 8.106890774205374e-09)


and so both integrals are equal to within the error in the numerical integration.

# Negative correlation introduced by success

Suppose you measure people on two independent attributes, X and Y, and take those for whom X+Y is above some threshold. Then even though X and Y are uncorrelated in the full population, they will be negatively correlated in your sample.

This article gives the following example. Suppose beauty and acting ability were uncorrelated. Knowing how attractive someone is would give you no advantage in guessing their acting ability, and vice versa. Suppose further that successful actors have a combination of beauty and acting ability. Then among successful actors, the beautiful would tend to be poor actors, and the unattractive would tend to be good actors.

Here’s a little Python code to illustrate this. We take two independent attributes, distributed like IQs, i.e. normal with mean 100 and standard deviation 15. As the sum of the two attributes increases, the correlation between the two attributes becomes more negative.

from numpy import arange
from scipy.stats import norm, pearsonr
import matplotlib.pyplot as plt

# Correlation.
# The function pearsonr returns correlation and a p-value.
def corr(x, y):
return pearsonr(x, y)[0]

x = norm.rvs(100, 15, 10000)
y = norm.rvs(100, 15, 10000)
z = x + y

span = arange(80, 260, 10)
c = [ corr( x[z > low], y[z > low] ) for low in span ]

plt.plot( span, c )
plt.xlabel( "minimum sum" )
plt.ylabel( "correlation coefficient" )
plt.show()


# Random minimum spanning trees

I just ran across a post by John Baez pointing to an article by Alan Frieze on random minimum spanning trees.

Here’s the problem.

1. Create a complete graph with n nodes, i.e. connect every node to every other node.
2. Assign each edge a uniform random weight between 0 and 1.
3. Find the minimum spanning tree.
4. Add up the edges of the weights in the minimum spanning tree.

The surprise is that as n goes to infinity, the expected value of the process above converges to the Riemann zeta function at 3, i.e.

ζ(3) = 1/1³ + 1/2³ + 1/3³ + …

Incidentally, there are closed-form expressions for the Riemann zeta function at positive even integers. For example, ζ(2) = π² / 6. But no closed-form expressions have been found for odd integers.

## Simulation

Here’s a little Python code to play with this.

    import networkx as nx
from random import random

N = 1000

G = nx.Graph()
for i in range(N):
for j in range(i+1, N):

T = nx.minimum_spanning_tree(G)
edges = T.edges(data=True)

print( sum([e[2]["weight"] for e in edges]) )


When I ran this, I got 1.2307, close to ζ(3) = 1.20205….

I ran this again, putting the code above inside a loop, averaging the results of 100 simulations, and got 1.19701. That is, the distance between my simulation result and ζ(3) went from 0.03 to 0.003.

There are two reasons I wouldn’t get exactly ζ(3). First, I’m only running a finite number of simulations (100) and so I’m not computing the expected value exactly, but only approximating it. (Probably. As in PAC: probably approximately correct.) Second, I’m using a finite graph, of size 1000, not taking a limit as graph size goes to infinity.

My limited results above suggest that the first reason accounts for most of the difference between simulation and theory. Running 100 replications cut the error down by a factor of 10. This is exactly what you’d expect from the central limit theorem. This suggests that for graphs as small as 1000 nodes, the expected value is close to the asymptotic value.

You could experiment with this, increasing the graph size and increasing the number of replications. But be patient. It takes a while for each replication to run.

## Generalization

The paper by Frieze considers more than the uniform distribution. You can use any non-negative distribution with finite variance and whose cumulative distribution function F is differentiable at zero. The more general result replaces ζ(3) with ζ(3) / F ‘(0). We could, for example, replace the uniform distribution on weights with an exponential distribution. In this case the distribution function is 1 – exp(-x), at its derivative at the origin is 1, so our simulation should still produce approximately ζ(3). And indeed it does. When I took the average of 100 runs with exponential weights I got a value of 1.2065.

There’s a little subtlety around using the derivative of the distribution at 0 rather than the density at 0. The derivative of the distribution (CDF) is the density (PDF), so why not just say density? One reason would be to allow the most general probability distributions, but a more immediate reason is that we’re up against a discontinuity at the origin. We’re looking at non-negative distributions, so the density has to be zero to the left of the origin.

When we say the derivative of the distribution at 0, we really mean the derivative at zero of a smooth extension of the distribution. For example, the exponential distribution has density 0 for negative x and density exp(-x) for non-negative x. Strictly speaking, the CDF of this distribution is 1 – exp(-x) for non-negative x and 0 for negative x. The left and right derivatives are different, so the derivative doesn’t exist. By saying the distribution function is simply exp(-x), we’ve used a smooth extension from the non-negative reals to all reals.

# Nearly all the area in a high-dimensional sphere is near the equator

Nearly all the area of a high-dimensional sphere is near the equator.  And by symmetry, it doesn’t matter which equator you take. Draw any great circle and nearly all of the area will be near that circle.  This is the canonical example of “concentration of measure.”

What exactly do we mean by “nearly all the area” and “near the equator”? You get to decide. Pick your standard of “nearly all the area,” say 99%, and your definition of “near the equator,” say within 5 degrees. Then it’s always possible to take the dimension high enough that your standards are met. The more demanding your standard, the higher the dimension will need to be, but it’s always possible to pick the dimension high enough.

This result is hard to imagine. Maybe a simulation will help make it more believable.

In the simulation below, we take as our “north pole” the point (1, 0, 0, 0, …, 0). We could pick any unit vector, but this choice is convenient. Our equator is the set of points orthogonal to the pole, i.e. that have first coordinate equal to zero. We draw points randomly from the sphere, compute their latitude (i.e. angle from the equator), and make a histogram of the results.

The area of our planet isn’t particularly concentrated near the equator.

But as we increase the dimension, we see more and more of the simulation points are near the equator.

Here’s the code that produced the graphs.

from scipy.stats import norm
from math import sqrt, pi, acos, degrees
import matplotlib.pyplot as plt

def pt_on_sphere(n):
# Return random point on unit sphere in R^n.
# Generate n standard normals and normalize length.
x = norm.rvs(0, 1, n)
length = sqrt(sum(x**2))
return x/length

def latitude(x):
# Latitude relative to plane with first coordinate zero.
angle_to_pole = acos(x[0]) # in radians
latitude_from_equator = 0.5*pi - angle_to_pole
return degrees( latitude_from_equator )

N = 1000 # number of samples

for n in [3, 30, 300, 3000]: # dimension of R^n

latitudes = [latitude(pt_on_sphere(n)) for _ in range(N)]
plt.hist(latitudes, bins=int(sqrt(N)))
plt.xlabel("Latitude in degrees from equator")
plt.title("Sphere in dimension {}".format(n))
plt.xlim((-90, 90))
plt.show()


Not only is most of the area near the equator, the amount of area outside a band around the equator decreases very rapidly as you move away from the band. You can see that from the histograms above. They look like a normal (Gaussian) distribution, and in fact we can make that more precise.

If A is a band around the equator containing at least half the area, then the proportion of the area a distance r or greater from A is bound by exp( -(n-1)r² ). And in fact, this holds for any set A containing at least half the area; it doesn’t have to be a band around the equator, just any set of large measure.